PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511127.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 323aa    MW: 35788.2 Da    PI: 9.7249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.7e-112071147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+  l  +v ++G+g W+tI +          R+  ++k++w++ 
   XP_016511127.1 20 KLKWTPEEEVALRAGVLKYGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRNM 71
                     689**********************************88***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-151786IPR009057Homeodomain-like
SMARTSM007178.2E-61974IPR001005SANT/Myb domain
PROSITE profilePS500907.412072IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.1E-132071IPR009057Homeodomain-like
PfamPF002491.3E-72071IPR001005SANT/Myb domain
CDDcd116601.81E-172272No hitNo description
SMARTSM005262.1E-12133198IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-16134212IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.879135203IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.4E-14138204IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-7140196IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVNGLFWELH FLDALMGAPK LKWTPEEEVA LRAGVLKYGP GKWRTILKDP EFSGVLYLRS  60
NVDLKDKWRN MTVMANGWGS REKAKLALKR MIQAPMQGES SAAVTSEAES DAEIPEAWPA  120
TTSRGSPQHG GSRRSILRLD NLIMEAISNL NEPGGSYQAT ISTYIEDQYW ETPNIRRLLS  180
AKLKYLTATG KLIKMKRKYK VAPKLTFANK RRNLPLPLLD SSQRICSKVD QDDINMLTRS  240
QIDLDLEKMK NMSPQEAAAA AAQAVAEADT ATAEAAEAAR KAEAAAAEAE AAQAFAEAAM  300
KTLQERSIPR MLVNMVKKFV GME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772620.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_016511127.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X2
SwissprotQ8VWK47e-90TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E11e-126M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595421e-126(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-82telomere repeat binding factor 1